Genome heterozygosity estimate by GenomeScope server

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posted on 2025-08-12, 08:07 authored by Kazuharu Arakawa, Nobuo Kato, Akio Tanikawa

<p>Genome heterozygosity estimate by GenomeScope server. Since GenomeScope server is based on short read sequencing, we used shorter k-mer = 17 to accommodate higher error rate of nanopore raw reads. Due to this error rate, genome size estimate would not be accurate, and calculated heterozygosity as well as the error rate may appear higher than the actual rates..</p>

Funding

The Yamagata Prefectural Government and Tsuruoka City, Japan

History

Related Materials

1.
DOI - Is supplement to Description and genome sequencing of Olios ishikawatodaorum n. sp. (Arachnida: Araneae: Sparassidae) from Aichi, Japan

Corresponding author email address

gaou@sfc.keio.ac.jp

Title (in Japanese)

GenomeScopeによるヘテロザイゴシティの推定

Description (in Japanese)

ナノポアリードのためK-mer=17で実行しており、ゲノムサイズやエラーレートは実際より高めに推定されていると考えられる。

Manuscript title (in Japanese)

愛知県から発見されたクロタビミナミアシダカグモ Olios ishikawatodaorum n. sp. (Arachnida: Araneae: Sparassidae) の記載及びゲノム解析

Authors (in Japanese)

荒川和晴, 加藤修朗, 谷川明男

Copyright

Common Metadata Elements (Only for the items supported by Japanese public funds)

This item includes dataset(s) related to publicly funded research (fill in all the fields below)

Funder

MEXT

Program Name

データ創出・活用型マテリアル研究開発プロジェクト

Japan Grant Number

JPMXP1122714694

Project Name

バイオ・高分子ビッグデータ駆動による完全循環型バイオアダプティブ材料の創出

Data No.

IAB-2025KA-AA01

Research Field

Life Science（ライフサイエンス）

Access rights

Open（公開）

Hosting Institution

Institute for Advanced Biosciences, Keio University

Data Manager

Kazuharu Arakawa

Contact of Data Manager