J-STAGE Data
Browse

Raw images and datasets acquired to develop the optogenetic tool for controlling p53 signaling pathway

Version 2 2025-07-10, 09:07
Version 1 2025-06-30, 08:06
dataset
posted on 2025-07-10, 09:07 authored by Tatsuki Tsuruoka, Yuhei Goto, Kazuhiro Aoki

The data set can be classified into five principal categories.


・The raw image data obtained by time-lapse imaging (TIF format).


・The tracking data by LIMTracker, a ImageJ/Fiji tracking plugin (LIMPJ format).


・Quantified data of fluorescence intensity of each cell track (CSV format).


・The raw images of the western blotting experiment (TIF format, Figure S1C).


・The raw image data and segmented image data by StarDist, a ImageJ/Fiji segmentation plugin (TIF format, Figure S2B, C)


Each folder corresponds to each figure in Related Materials 1. Details of the data in each folder are described in a text file named Memo.txt.


LIMTracker is a cell tracking software with simple operation and high versatility. 

You can preview the tracked data by launching LIMTracker on ImageJ/Fiji and opening the .lmpj file.

 LIMTracker is available from the following website (https://github.com/LIMT34/LIM-Tracker).

The original paper is:

Aragaki, H., Ogoh, K., Kondo, Y. et al. 2022. LIM Tracker: A software package for cell tracking and analysis with advanced interactivity. Sci. Rep., 12, 2702. 

https://doi.org/10.1038/s41598-022-06269-6


Funding

Takeda Science Foundation

NAGASE Science Technology Foundation

History

Corresponding author email address

aoki.kazuhiro.6v@kyoto-u.ac.jp

Copyright

© 2025 The Author(s)

Common Metadata Elements (Only for the items supported by Japanese public funds)

  • This item includes dataset(s) related to publicly funded research (fill in all the fields below)

Funder

JSPS; JSPS; JSPS; JSPS; JSPS

Funding Stream Code in Japan Grant Number

JP21J15111; JP19H05798; JP22H02625; JP24H01416; > JP22K15110

Usage metrics

    Cell Structure and Function

    Licence

    Exports

    RefWorks
    BibTeX
    Ref. manager
    Endnote
    DataCite
    NLM
    DC