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High-resolution phase-contrast images, fluorescent images, and ground truth masks used to establish deep learning-based segmentation models for subcellular organelles in phase-contrast images

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posted on 2024-07-30, 23:31 authored by Kentaro ShimasakiKentaro Shimasaki, Yuko Okemoto-Nakamura, Kyoko Saito, Masayoshi Fukasawa, Kaoru KatohKaoru Katoh, Kentaro Hanada

The 'Dataset_for_Training_and_Validation_of_DL_Models' folder comprises high-resolution phase-contrast images, fluorescent images, ground truth masks, and predicted masks used to develop deep learning-based segmentation models for mitochondria or lipid droplets in phase-contrast images. The 'Data_for_Figure_Preparation' folder contains high-resolution phase-contrast images, fluorescent images, ground truth masks, predicted masks from each processing step, and analyzed results for validating the accuracy of the established segmentation models. 

Funding

Lipid transport through the endoplasmic reticulum membrane-associated zone

Japan Society for the Promotion of Science

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Toward an integrative understanding of functional zones in organelles

Japan Society for the Promotion of Science

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Construction of next-generation virus-infected cell analysis system utilizing apodized phase difference and AI technology

Japan Agency for Medical Research and Development

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Japan Society for the Promotion of Science

Japan Agency for Medical Research and Development

Morinomiyako Medical Research Foundation

History

Corresponding author email address

shimak@niid.go.jp

Copyright

© 2024 The Author(s)

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