Bayesian model and posterior distribution dataset for estimating the distribution of <sup>137</sup>Cs concentrations in various wild mushroom species in Japanese municipalities
posted on 2023-06-28, 12:23authored byMasabumi Komatsu
<h4>Komatsu_2023JJFS_stan_model.stan</h4>
<p> - Model file for Bayesian analysis with rstan.</p>
<p> - Hierarchical Bayesian model with the ordinary logarithm of <sup>137</sup>Cs concentration in wild mushrooms as the objective variable and the random effects of the mean concentration for species (r_sp), the error in concentration per species (r_sigma) and the concentration effect per municipality (r_mun).</p>
<p> - Consists of eqs. (1)-(5) in RELATED MATERIALS 1.</p>
<h4>post_stan.RData</h4>
<p> - RData file to store the results of the posterior distribution obtained by the hierarchical Bayesian model (post: variables in list format)</p>
<p> - post$species: species names corresponding to columns in rsp and rsigma</p>
<p> - post$rsp: random effect of species</p>
<p> - post$rsigma: standard deviation of individuals by species</p>
<p> - post$mu_sp: hyper parameter of mean in rsp</p>
<p> - post$sigma_sp: hyper parameter of standard deviation in rsp</p>
<p> - post$mu_sigma: hyper parameter of mu in rsigma</p>
<p> - post$sigma_sigma: hyper parameter of standard deviation in rsigma</p>
<p> - post$sigma_mun: hyper parameter of standard deviation in rmun</p>
<p> - Posterior results of random effects of municipality (rmun) is excluded.</p>
Funding
Production of low-cesium mushrooms based on the genes analysis